NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136641_1001240

Scaffold Ga0136641_1001240


Overview

Basic Information
Taxon OID3300013286 Open in IMG/M
Scaffold IDGa0136641_1001240 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10768
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Elizabeth Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.3697Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016143Metagenome249Y
F017287Metagenome241Y
F027764Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0136641_100124014F016143GGAMNDYIYTPSGTDITVRWKLYGYVPPSELPEYQKKWKYYQELPLRKLDDQAKREYEMVLKKAKVVRIR*
Ga0136641_100124016F027764AGGMKLIIEVVKENEDGSADAMVHFDKEALEMLVEEGVISILRQYIAQQKKEKKAKK*
Ga0136641_100124017F017287AGGMSYDKDWTRKVFEGEAPCDKCDQTQTCKENEWACRAFSYYVLHGSFEAYTVRHPTRGMFNKIFKEDDKALKNYLKIKGDQNEINN*
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