Basic Information | |
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Taxon OID | 3300013286 Open in IMG/M |
Scaffold ID | Ga0136641_1001947 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8443 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Elizabeth Lake, Yosemite National Park, California, USA | |||||||
Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.3697 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001629 | Metagenome | 660 | Y |
F017289 | Metagenome / Metatranscriptome | 241 | Y |
F050052 | Metagenome | 145 | N |
F096620 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136641_100194710 | F001629 | AGG | MILNQGKVAGGLVDELLELIHKYDETMYMATVIGCLELVKQQLINDATEAEDD* |
Ga0136641_100194712 | F050052 | GAGG | MIYTTFKQWVKGRFLEKGEPRKQAYSKDELALIEMGWGYGYDAGVEAEREACAKVCDVLAYHPEFASDATKLAAMAIRARGDKA* |
Ga0136641_100194715 | F096620 | GGAG | MTPKFTQLLEQCITAGVILGHKRAYKHNDAPSESDINQSIVNEVLNEIHEWFDFDESKEKNNG* |
Ga0136641_10019476 | F017289 | AGGAG | MKTKQEIRDEILELYGASKALSEAMDVLHAQRMEKSKQMMALSHMLKDMKNDIGDKDA* |
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