NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136641_1007476

Scaffold Ga0136641_1007476


Overview

Basic Information
Taxon OID3300013286 Open in IMG/M
Scaffold IDGa0136641_1007476 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3791
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Elizabeth Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.3697Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F007848Metagenome343Y
F014955Metagenome258Y
F031765Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0136641_10074761F031765GGAGMKDYEPNNAIDFIFKTAPAYAKAKGELAQLEAFKSSLKAIKMAQTDEQSLGAQER
Ga0136641_10074763F014955GGAVEIEKIIVAATGLGYLVVGLAQYFKGSNSNALIWLGYAAAQIGLWMNLK*
Ga0136641_10074765F007848GGAMKDFIGACLLGAALGAMFAYGIAEAQTVQLTDSRGYNVGTVQINGNTAQFVNPMGYTTQTATLYPNQVVISTPNGVATNVIGTTIYTVPPSPTTPISPRVLQ*
Ga0136641_10074767F007166GGAMDEMYQFQNEMEERLEIALDNMEYGTDLSADDIDVIRAACGKPKKRNDHVNPLLRDVINDFGAIFGGAK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.