Basic Information | |
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Taxon OID | 3300013286 Open in IMG/M |
Scaffold ID | Ga0136641_1007476 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3791 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Elizabeth Lake, Yosemite National Park, California, USA | |||||||
Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.3697 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007166 | Metagenome / Metatranscriptome | 356 | Y |
F007848 | Metagenome | 343 | Y |
F014955 | Metagenome | 258 | Y |
F031765 | Metagenome | 181 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136641_10074761 | F031765 | GGAG | MKDYEPNNAIDFIFKTAPAYAKAKGELAQLEAFKSSLKAIKMAQTDEQSLGAQER |
Ga0136641_10074763 | F014955 | GGA | VEIEKIIVAATGLGYLVVGLAQYFKGSNSNALIWLGYAAAQIGLWMNLK* |
Ga0136641_10074765 | F007848 | GGA | MKDFIGACLLGAALGAMFAYGIAEAQTVQLTDSRGYNVGTVQINGNTAQFVNPMGYTTQTATLYPNQVVISTPNGVATNVIGTTIYTVPPSPTTPISPRVLQ* |
Ga0136641_10074767 | F007166 | GGA | MDEMYQFQNEMEERLEIALDNMEYGTDLSADDIDVIRAACGKPKKRNDHVNPLLRDVINDFGAIFGGAK* |
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