NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120150_1001909

Scaffold Ga0120150_1001909


Overview

Basic Information
Taxon OID3300013294 Open in IMG/M
Scaffold IDGa0120150_1001909 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A3_65cm_0M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5439
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007914Metagenome / Metatranscriptome342N
F036496Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0120150_10019096F007914N/AVRLWQRLARRAGFRGTVAVYGYGVGGRPGGAQRKAERTGVQDGMVLADYEPGLIRVWVPCTCQAADFDVDQLHDAHEDPLASFAHELGHHVQYARRRTYFNEAVAERYGRLLLREFGVR*
Ga0120150_10019098F036496N/APRPPAEREPDPARHVGTGAPADDAAAAHVRATILIAAHDARATEVTLDAARRLMALHKMQAASDVLLDLIGAGFRDREAQRLLIEIDCELGRRDTARVKCQLLGAAYRLDGQGAVAEDVERLAAIL*
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