Scaffold Ga0170791

Basic Information
Taxon OID	3300013295 Open in IMG/M
Scaffold ID	Ga0170791_13336984 Open in IMG/M
Source Dataset Name	northern Canada Lakes metatranscriptome co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013295 Open in IMG/M

Scaffold ID

Ga0170791_13336984 Open in IMG/M

Source Dataset Name

northern Canada Lakes metatranscriptome co-assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2010
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2010

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Quebec
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Quebec

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F058142	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170791_133369841	F058142	AGGAG	MAEVTYAVLNEPTVQQSQIVAVLRRDIPTSWNIPIYDDFPSDSEVVRYGIYVSDVHTVERNPHQLGIQYCGSVYHAYDEFGITYISYQDDPYNVAVNAIIANLVTAIKDDGVQLMDGYFERDFDQVRTYGPTQAEKHTWTFRLLRMEFNT
Ga0170791_133369842	F002260	AGGA	MSVPYQRISNATVEDIMFYDPAAERRASALSVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPDGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDVQNYEFAKKRCEDEWTKALQLMNFYDLYMDSPQGPTTKLEENWTADVDYFNGDRRYF*
Ga0170791_133369843	F011761	N/A	NEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYADYNANSNVGTWGTGNANVQNPSLEQASITATPAVATTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTNAFLSFKATPSNTYYATSADGFDRVLQLGAMELLPSGGTASSAVTGFTATTVTEMIRNIKQNFKVARMPGNPMIVIDSNGDDGVIGSSLNRLLSELTGGAVSQTCGSNLSPLGNELLSTGRIENIYGCMVMATTFLQSATRAIVSESGGSYPVLVGAYFGDSALFTVMKEGLQLKTGETPGGLQIWLTGVGYFGSGVGDLRRGGAINIIQA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0170791_13336984

Overview

Ecosystem & Geography

Associated Families

Sequences