NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170791_13842588

Scaffold Ga0170791_13842588


Overview

Basic Information
Taxon OID3300013295 Open in IMG/M
Scaffold IDGa0170791_13842588 Open in IMG/M
Source Dataset Namenorthern Canada Lakes metatranscriptome co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1013
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N
F055677Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0170791_138425882F011150GGAMDINYHNKTHHKIIENFRHDIIMRKLKQKEGKEFRNMFIKIFLIIVIAILLLAVINNYR*
Ga0170791_138425883F013409N/AMKVILMLIMMNGTVYNLGYKVESYNARTCDKLFDSITYKGKTSGKNKQGTFYKSKEVFAYSCSIEKTTKGNNERKNKTG*
Ga0170791_138425884F055677N/AMKEKIKQVNELCAANGAYINQHGKKTVSAWSKVKYFREVFGTEFGINTMIVEHSDRYVIVKCLIMGYDPERIIATGYSKQFRDKPGYLEIAETFATTRALSFFGICLEDLTSKEEYEDLEIPVQPMNGKDTTSAAIRYDDGIILELTKKINYAPHTA
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