NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0170791_14438244

Scaffold Ga0170791_14438244


Overview

Basic Information
Taxon OID3300013295 Open in IMG/M
Scaffold IDGa0170791_14438244 Open in IMG/M
Source Dataset Namenorthern Canada Lakes metatranscriptome co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1296
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002708Metagenome / Metatranscriptome535N
F014500Metagenome / Metatranscriptome262N

Sequences

Protein IDFamilyRBSSequence
Ga0170791_144382442F014500N/AMNNELSAESDLRNMITVDISETMIPEIELTEAELQAADDIRFSDEMAVTVAELPVFTDEQTNRYNDKMTMLAAIRADISVLNKAVTDETESYSVPAGRYDHVYSMGTI*
Ga0170791_144382443F002708N/AMKKLQKEFTANYDRVGNTKFIQLKKENGVAIYERQNMDGSFRSYEVFVVKVIEKGTALPGGNSVQETYEQYPGCAAFGKTAYDCKTIDSAEERFDELVKKVKCSNDAKEESIKTGVPVKRGRKASVKMNVKMTLKKDSKFTINMLTTYTGVNIVYIRKAVNEWLES
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.