NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163162_10145538

Scaffold Ga0163162_10145538


Overview

Basic Information
Taxon OID3300013306 Open in IMG/M
Scaffold IDGa0163162_10145538 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2486
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007282Metagenome354Y

Sequences

Protein IDFamilyRBSSequence
Ga0163162_101455383F007282GGAMEARAQDGGVDTNCPHCAAPLTVPRIPPNPYLRPIKNIVRQMKGVPLPFPYLPQLIQLAVLTSVLALFGVLFITIGVVTQAAGVFRGLILDTQKHLREGSTVERSAQAISIGFYPLLFLPLWTIQLPFSLVGSIWSSRRLGALLTVSPLLSIAYVITLYSHHLIRFWHSF*
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