Scaffold Ga0175859_1074845

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0175859_1074845

Scaffold Ga0175859_1074845

Overview

Basic Information
Taxon OID	3300013314 Open in IMG/M
Scaffold ID	Ga0175859_1074845 Open in IMG/M
Source Dataset Name	Moss microbial communities from three moss species from boreal forest in Fairbanks, Alaska, USA Reanalysis
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Colorado
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2651
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. PAMC 26605	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Moss Associated → Moss Microbial Communities From Three Moss Species From Boreal Forest In Fairbanks, Ak, Usa

Source Dataset Sampling Location
Location Name	USA: Fairbanks, AK
Coordinates	Lat. (^o)	64.8591667	Long. (^o)	-147.8247222	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016390	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0175859_10748452	F016390	N/A	MDQDTVKFGLLMESAQAHQKLAETHLEKLRAHTQDLDGVVRDEIRRTLIEELQMLTAESRRATEVLRNMKRAAAARGALWSVATAILCTAIPIAIMRWMLPSESEVAALRARRDQLASIVASLEQRGGRIDLKRCGEGSRLCVRVDRKAPTYGEKADFYVVAGY*

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