NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0173609_10821723

Scaffold Ga0173609_10821723


Overview

Basic Information
Taxon OID3300013315 Open in IMG/M
Scaffold IDGa0173609_10821723 Open in IMG/M
Source Dataset NameSediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Davis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment → Sediment Microbial Communities From Acid Mine Drainage (Amd) Holding Pond In Pittsburgh, Pa, Usa

Source Dataset Sampling Location
Location NamePittsburgh PA
CoordinatesLat. (o)40.4406Long. (o)-79.9959Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055594Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0173609_108217231F055594N/AMRCATCHQKEATIHFRAVVDGAEEETVHLCPDCAPLTGFLDLKEIQALTVLGKKCEFCGSDASSGELRPDVGATYWCFDCGSELMRILSDLLRAERPDLLQRSEAKSSFLSFCSDTGFQAWSEAACQKAVQTLKERRR

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