Scaffold Ga0119859_10021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119859_10021

Scaffold Ga0119859_10021

Overview

Basic Information
Taxon OID	3300013556 Open in IMG/M
Scaffold ID	Ga0119859_10021 Open in IMG/M
Source Dataset Name	Assembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA - NIBSC_BSRI
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Blood Systems Research Institute (BSRI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3354
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Synthesis → Unclassified → Unclassified → Unclassified → Assembled Human → Assembled Human Viral Communities From Clinical And Cell-Culture Passaged Samples From San Francisco, Usa

Source Dataset Sampling Location
Location Name	USA: San Francisco
Coordinates	Lat. (^o)	37.77	Long. (^o)	-122.44	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089592	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119859_100213	F089592	AGG	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEG*

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