NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119859_10104

Scaffold Ga0119859_10104


Overview

Basic Information
Taxon OID3300013556 Open in IMG/M
Scaffold IDGa0119859_10104 Open in IMG/M
Source Dataset NameAssembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA - NIBSC_BSRI
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBlood Systems Research Institute (BSRI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1285
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Synthesis → Unclassified → Unclassified → Unclassified → Assembled Human → Assembled Human Viral Communities From Clinical And Cell-Culture Passaged Samples From San Francisco, Usa

Source Dataset Sampling Location
Location NameUSA: San Francisco
CoordinatesLat. (o)37.77Long. (o)-122.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057001Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0119859_101041F057001AGGMTGKDVNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENEIKVDKSIVPALVNLAKDKEIVIQLCKEILPRVNNTFCAYKEVEREYYDKNDQDKNKKLKMNEIENVAILGSSHKRFGYNEPIEFDFGIYYETFNGADKRIVKCAVPIKRYTFSLIAKCITYYLTHPKNDR*
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Biomedical Sciences Research Center "Alexander Fleming"
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