Scaffold Ga0117783_106620

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117783_106620

Scaffold Ga0117783_106620

Overview

Basic Information
Taxon OID	3300013674 Open in IMG/M
Scaffold ID	Ga0117783_106620 Open in IMG/M
Source Dataset Name	Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_NLN_DNA_SISPA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Institute of Marine Science
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	620
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Coral Tissue → Coral Viral Communities From The Great Barrier Reef, Australia

Source Dataset Sampling Location
Location Name	Australia: Great Barrier Reef
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073582	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117783_1066202	F073582	AGGAG	MTVLKKDYEAVFKEGFKLGTRLARAKINLMRANDSRMINDEPMMKHYQEYAETWTQLAKNCGRKFTPPVAHSLSQPTIDLGDVELLNHKYDDKPEDEHGYLQS

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