Scaffold Ga0116824_100778

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116824_100778

Scaffold Ga0116824_100778

Overview

Basic Information
Taxon OID	3300013722 Open in IMG/M
Scaffold ID	Ga0116824_100778 Open in IMG/M
Source Dataset Name	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	926
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location Name	USA: Gulf of Mexico
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073277	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116824_1007782	F073277	AGGAG	MKLAVTIDVDGDIMYVPEGSVFPNFPKPKLFDNIEDAEEECAKWNTGVIVNYETGESVGKIRSFTDAERRRAEERARINRYDGTSTNQDTTQ*

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