NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119799_100421

Scaffold Ga0119799_100421


Overview

Basic Information
Taxon OID3300013749 Open in IMG/M
Scaffold IDGa0119799_100421 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Los Angeles, CA, USA - S13-03-R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Los Angeles
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36428
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (90.24%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N

Sequences

Protein IDFamilyRBSSequence
Ga0119799_1004212F018385GGAGMAEYENQWGPYKENSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0119799_1004219F027205N/AMRAVKESEEFERKALAAARKRDRAEGKPPRDVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
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