NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117817_1001300

Scaffold Ga0117817_1001300


Overview

Basic Information
Taxon OID3300013752 Open in IMG/M
Scaffold IDGa0117817_1001300 Open in IMG/M
Source Dataset NameHuman gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 288
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChalmers University of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8913
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074964Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0117817_10013004F074964N/AMITKKNVNKLQNAAIKENAANLVGAVKLYNALFANGSNLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDIFVKFTLYSKVYKDTNVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTSESLETKKSTKWLIKETEEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*

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