NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120111_1013520

Scaffold Ga0120111_1013520


Overview

Basic Information
Taxon OID3300013764 Open in IMG/M
Scaffold IDGa0120111_1013520 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A28_35cm_6M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2430
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066522Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0120111_10135202F066522N/AMLIPVLVGFFALLHPTPLPSPAATSADIAGLYVGTRLNYHALPRIERVPSVDGWEHWFKLEEALITIRPDGRFIASFRYYRQHVPPRAPVRPGPLLNESYKGKYSVKGTTITFVPDKTKEHKVVRPIVGTISNSQLSIPYIVAEGQSQHPLRLDMRRESGW*
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