NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181471_100521

Scaffold Ga0181471_100521


Overview

Basic Information
Taxon OID3300013865 Open in IMG/M
Scaffold IDGa0181471_100521 Open in IMG/M
Source Dataset NameClean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5p-11 gowning area SPAdes reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11917
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Source Dataset Sampling Location
Location NameUSA: Jet Propulsion Laboratory, Pasadena, California
CoordinatesLat. (o)34.1Long. (o)-118.1Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028713Metagenome / Metatranscriptome190Y
F034461Metagenome / Metatranscriptome174Y
F100750Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0181471_10052113F100750AGAAGGMEHIEEFQKLNIRVKNIPEEHRIDVFIGTLKDNIRHDVHLWELDSLEKEIRLARKMERKIMATRKHTSHNYKGGSVVTPSLPQPIRLTPQ*
Ga0181471_1005213F028713GAGGMIEEKKVLVVKVDTLKNTTYALTKFVSYEKFSWCRETMGISGLVK*
Ga0181471_1005218F034461N/AMTSKSSTKKGSKNVVADALSRKDEDVEALLCVISIIQPNWIDEAREEWKNDEEVWVVIRK
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