Scaffold Ga0116620_1010222

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116620_1010222

Scaffold Ga0116620_1010222

Overview

Basic Information
Taxon OID	3300013902 Open in IMG/M
Scaffold ID	Ga0116620_1010222 Open in IMG/M
Source Dataset Name	Baboon gut microbial communities from fecal samples in Kenya - F11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Duke University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1182
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)	2.717	Long. (^o)	37.1	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056682	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116620_10102222	F056682	N/A	MKTQSRAGKVANQPIGQGKMYSASFSAFPSKNRTIFPIQELRKIHENQEVL*

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