Scaffold Ga0117792_1034176

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117792_1034176

Scaffold Ga0117792_1034176

Overview

Basic Information
Taxon OID	3300013941 Open in IMG/M
Scaffold ID	Ga0117792_1034176 Open in IMG/M
Source Dataset Name	Epidermal mucus viral and microbial communities from European eel in Spain - water from Alfacada pond (Ebro delta)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Valencia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	560
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus → Epidermal Mucus Viral And Microbial Communities From European Eel In Spain

Source Dataset Sampling Location
Location Name	Spain: Alfacada pond
Coordinates	Lat. (^o)	40.647955	Long. (^o)	-0.738702	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008128	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117792_10341762	F008128	AGG	MEPVTVPKLTVSFAVDIELGYNSFSGKTADEIAESLQDEIHDLLFELEQVTGVYTSCTSIATND*

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