NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120381_1005883

Scaffold Ga0120381_1005883


Overview

Basic Information
Taxon OID3300014047 Open in IMG/M
Scaffold IDGa0120381_1005883 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Missouri
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3364
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)41.314168Long. (o)-105.584589Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065282Metagenome / Metatranscriptome127Y
F092990Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0120381_10058833F092990AGGAGGMSKSDQIALGRNQGLDLARRIVAQAQQDGADPLKALDMEIRSRHIIGIAAKMTKSEWEKEFAAAMELAYKAAMVIAMAVLWGDFGWGGVKRLPKFCNAYLNYLMEIGRQNTSITELVDLLETKAGVHVDLAEKGFTADFRKAKGKDRIA*
Ga0120381_10058835F065282N/AMDCEVVAMTEERHECRTYTEMLAVLRKAKADGHTAWWNSEELRAGILIVYVRKEDNNG*
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