Scaffold Ga0119952

Basic Information
Taxon OID	3300014050 Open in IMG/M
Scaffold ID	Ga0119952_1006019 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014050 Open in IMG/M

Scaffold ID

Ga0119952_1006019 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5524
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5524

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007111	Metagenome / Metatranscriptome	357	N
F020667	Metagenome	222	Y
F024098	Metagenome	207	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10060192	F020667	N/A	MSVTLIAYPLNDSNVEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNERCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSSHVSGTWTASGAASSGYVYGVIDAAGFSDLTRGEFVAPWWRLGPSIYVKKMIDLIFTQAGYRYSSNFFNSATFGKLVLPYAAGTLTSNLSGSNIFAQATGSVSASLTTIANLEFSRDNVNPYYDRPSYWVASSSTFLAPTVPTRWNIQLNYIVSGVTFGLDGVAGGDFDIYNTATSSTIAQIGTVDLTRSSYPFSGSILFENVTIPANAVVKFRYDETEGATFVRFNSGGTVQFTCLENPVSIGVVDMRTALPADVKQGDLLQDLQKMFNLHIMADSQDPKLLYIEPWVDFYASGVVDWSQKADENAEQILTNGDPNASTNLIFKYKDMSDYLSKTYKQSYPLAREGYGGKLFPTQNFYGKGDKVVETSCGTLIPASFASDKILGRTWDLEGTQQSGTIKPLQTGYRLAQYNLIANQTPWLYWYAVDTGVAVSVAQTNLPFISHIDNPYAPTFDLAFEIPRLVYYNAVNASGSTINYTNNNLFNKYWKNYVNETVSKEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLADFVPVTDVPIYSNPEFLYNGPITSDPTDPNYEPPINPELPQPGE*
Ga0119952_10060193	F024098	N/A	MLFKVSGSLIAQPNYRYVCDVKNAAGTTTLARLKCDKLPTTNYGFFDVSKVVETLIAPTKPSLTQTGFADHAGFYSGYRLTFMEEYGSTPVVQTGTVTTVSGRVAFAGNLEQLELADWSGGVYFPGFITDGVSKALTTPTTRTVYGTDYGFLCMGLSGQPWDRVQVTYPTRTFTVALPASVSGSIARFGAGPMNLKALTSGQCSDSQAGSVGFPTADGSSYTIAFEDSFAGNFSVYYTYTIGPCQRFNSQPVHFVNKYGGIDSYTFTLKNRKRANVQRDTFGYNTDVYGTLTYDKVWAGSFDYVYALNSDWLTDAESEWLIELVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQLEVAIAYKNNIL*
Ga0119952_10060194	F007111	AGG	METTVLLNGTEVNKFGSGSMKGIDQTALEGIGSIAGPKGGGKSPTYDVLVKWVARVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDRGVHGRTSSYLSVRDSKFKYKDKIPPPQAIADWIANKGIPVIPTYSRKLKRMRTKQEQGLVDGRSIAFGIRERGLEATNFMSNAVTPEMVDVLVNTVAETLGKSISVATKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119952_1006019

Overview

Ecosystem & Geography

Associated Families

Sequences