NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119952_1007176

Scaffold Ga0119952_1007176


Overview

Basic Information
Taxon OID3300014050 Open in IMG/M
Scaffold IDGa0119952_1007176 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4867
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004110Metagenome452Y
F009331Metagenome / Metatranscriptome319Y
F100350Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0119952_10071762F100350AGGAGMIYSFKCDCGSTRDIEQSIHAAIEEPMCTDCHQMMSRCWSSPAITFKGPGFYSNGG*
Ga0119952_10071764F004110GAGVSNLHPIVYDLAPSVAYAIHRRYKNWVEKDDIAQECIAWAITRNDYITEQMSVEDPKELEHNEKRIAYQMRRAAERYVRKEKANKSGYQLMDEAYYETLMLGQLLPFVIASVIDGTVLEQAQEMIRDGQPRGSSSPAEGGNLLASLIDIKKAFLELDQKDQIALRMRHHDNATLQQIAEFLECAVSTADRRCTNSLRRLQDKLGGETPYR*
Ga0119952_10071767F009331AGAAGGMICTYCIRAGEENSVGHLKRAAHWHEKCDYKGCVCQHKTGQGWVKVAGVRTPLMQIQSP*
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