NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120109_1000247

Scaffold Ga0120109_1000247


Overview

Basic Information
Taxon OID3300014052 Open in IMG/M
Scaffold IDGa0120109_1000247 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A23_35cm_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14219
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012203Metagenome282Y
F066067Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0120109_10002474F012203AGGMDLVASACVSLAVISLALAVLGRSTEGPIKKLVDRQIAWQSLRLEQARIARRPHTLLLMTVLVPAALFLLGWIESPVLAILGAACGFLAPRVYLTWLVRVQARRSEEQAPRLLQVILSSLSSGSTYLDALRQARQAISDCWIREDLEVVIQRFLLNVPLHESMRSIRARISTPNLGLVWEALIICSSNQLPTPAARTLLYELSATVQFNVQLEQEVRAKTSGQRLQIWLLAAIVPGMYLYLRLISPELLSTLDQTVMGRYVLVPTAAALEVLGVYLSLRLSRFSA*
Ga0120109_10002477F066067N/AMKRRRRQRGQETLQALLAVSFMLLPVLLGIIELGGLIHVWMGQQSAAAIGARVAGERGEDDAVVRDRIRTELLAAGLTPGNVANSVIPSVARWGQPIRVVLVSHRRVAIPFLFSRNIDLQSSYVSRAEVNH*
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