Scaffold Ga0119878_1095133

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0119878_1095133

Scaffold Ga0119878_1095133

Overview

Basic Information
Taxon OID	3300014055 Open in IMG/M
Scaffold ID	Ga0119878_1095133 Open in IMG/M
Source Dataset Name	Sewage treatment plant microbial communities from Vermont, USA - ANOX_W
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Norwich University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	794
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant → Sewage Treatment Plant Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location Name	USA: Vermont
Coordinates	Lat. (^o)	43.727094	Long. (^o)	-72.425964	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001844	Metagenome / Metatranscriptome	627	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119878_10951331	F001844	N/A	GQVEALLRIDGRVEPIIAELTRQYTQNYQKSTNIESRLWHSVFDLVKAFIAAYGIALKAGYPRADNKRWRAILPWVIVRLAHYRGLDGKYRLFRYSHWIPAQWREFHELYEFARMRGWQREQLIFGVGAFAKPGVSFEQEYLKTLLLMRLDSGNFTPDQVEWVARQLEDWTPTLALTPPPSEGAPFFVDLTGTTGLRRRDRAQAGGRVMFLDAAPIYARVVERMRWLPEQDSELPKAGELPAREQRLLLMRLASLFGLDAIAQA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.