NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119878_1211195

Scaffold Ga0119878_1211195


Overview

Basic Information
Taxon OID3300014055 Open in IMG/M
Scaffold IDGa0119878_1211195 Open in IMG/M
Source Dataset NameSewage treatment plant microbial communities from Vermont, USA - ANOX_W
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwich University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant → Sewage Treatment Plant Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location NameUSA: Vermont
CoordinatesLat. (o)43.727094Long. (o)-72.425964Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057612Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0119878_12111951F057612AGCAGGLTAQAEAQQAAAQAQWQAEAEEKTRAAVEHFKGLLARAEIERDEAKQFAAEGFRQVQNLEKKLTDASSLLAGWKNGKSAVASPGWEG*
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