Scaffold Ga0120384_1256728

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120384_1256728

Scaffold Ga0120384_1256728

Overview

Basic Information
Taxon OID	3300014057 Open in IMG/M
Scaffold ID	Ga0120384_1256728 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1208
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Missouri
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	582
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	41.314168	Long. (^o)	-105.584589	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088017	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120384_12567282	F088017	GGAGG	MKKDSFEVIWDFLAPDEQHFGNRKEACKRLWSGLPVPKQRQIYATLFWQREQKIAIDENPYFAISHCQPKPFNYNGANVSLPNDTKLFIAKYGDHYGVYSKLDTEAFEMVDKRPFN*

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