NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119967_10228499

Scaffold Ga0119967_10228499


Overview

Basic Information
Taxon OID3300014060 Open in IMG/M
Scaffold IDGa0119967_10228499 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Berkeley
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Geyser, Utah, Usa

Source Dataset Sampling Location
Location NameUSA: near Green River, Utah
CoordinatesLat. (o)38.938Long. (o)-110.08Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014357Metagenome / Metatranscriptome263Y
F019951Metagenome / Metatranscriptome226N

Sequences

Protein IDFamilyRBSSequence
Ga0119967_102284991F019951N/AMTILFKEFRIDVSANNVKCEANNKLYVQKGQKIKLHAIQIAPGIDIAHEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGSYARTINGVYMYEITS*
Ga0119967_102284992F014357N/AKKNNPSEFCDFPFRGGVAAKRKIDLYGILYSSRGADDGDLTHYIHTEYLKLMKGRNVLFDSMRKGLPAHGKNVPVNGAFRAENGYDVGGEYSDIYQKDALIFDQPFRFTNGEELDTYWTTSVLTSAPGTFLARELEIAYILKETQE*
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