NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134081_10025330

Scaffold Ga0134081_10025330


Overview

Basic Information
Taxon OID3300014150 Open in IMG/M
Scaffold IDGa0134081_10025330 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1692
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004582Metagenome / Metatranscriptome432Y

Sequences

Protein IDFamilyRBSSequence
Ga0134081_100253301F004582GAGMRYGVLIELEEYWQSLGVLWGELLYSVTLTPGDEAKLAVLDGRWRREADGRERPLQILARMVGTSMLGDLITALRPELQLDPLTVVEPGLEAVAADTVQMIRDRTERMSHALRRRPLGVVDAPADTPATGAIRHVRNTTRDRLVTFHFFEPLERFKVMVRSPRARPVVFVPLRLPNVATADVIQRFGYLFRRTLLDRGLLPDLERLLSGEEPGAAPSGAPRSRLLEHIEANLLYYSTAIISAGDPAARYVALSKLRDPAGRPLTDVVENTVIGRVGSAIALPLRSAGELPAQWRDALAAYQAHPLRVSEGFVVTIPHPGVWVSAQAHEPMQQEQADSHEAAG*
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