NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181533_1011997

Scaffold Ga0181533_1011997


Overview

Basic Information
Taxon OID3300014152 Open in IMG/M
Scaffold IDGa0181533_1011997 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6481
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F018429Metagenome / Metatranscriptome235Y
F076450Metagenome118N
F079694Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0181533_101199712F018429GGAGGVNPYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLM
Ga0181533_10119972F076450N/AMRSDSQGRAIQIGRYLNTPLVLNVGVTSASILLNQNQHYRLWGSVDLFFQFGPTGVAATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISQIDAQGV*
Ga0181533_10119973F079694AGGAGMPTYQNATPSSALYPGDVGYSWNNEAFPGATTSGSQFALSTPGGYAPETGFAVRWQTIYGSAPSAVNIRLQGAMADVDAEYMDIDTSTQVAGEGRQVTGVQAKFLRIKLYSSTGGSGLTAKILV*
Ga0181533_10119979F000188GAGGLAEVEEEERRQPEEKMSVKPEMAFDVCWEVYRGAREVLEAKRGITALTWEVDAKYSWRPDLRPKLKDWVADFALAGQAALEGPERASRMVLFRLYYLGLTPYERARHFLGLSERSWVNWSEEIRRRCGEELLRRDLFPPRKYFGGGD*
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