NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181533_1070409

Scaffold Ga0181533_1070409


Overview

Basic Information
Taxon OID3300014152 Open in IMG/M
Scaffold IDGa0181533_1070409 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1684
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053110Metagenome / Metatranscriptome141Y
F086481Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0181533_10704092F053110GAGGMRSGQSTACTSRIHQGRTETNETREEEDLKRNFRKYFGTGIVVMGLLLAAGIPAFAKNSGTVTLLHDASLHGKTLRAGSYAVEWKTHSPQATVQFSQRFKVSLFAEGRVERRAKKYEQNAVVYDTAPDGSLFIVEIRFANSKRVLVFN*
Ga0181533_10704093F086481AGGGGGMGVRGYLGIFLVSVVLVLAYAISGFAKTARNVDIEHAVVVSGTTLPAGQYAVRWEAQNPQASVEFVRNRKVVASAPCKLEDRGKKYDSSTVIYATNPNGSNTISEIRFAGSSEVLVFSE*
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