Scaffold Ga0181518

Basic Information
Taxon OID	3300014156 Open in IMG/M
Scaffold ID	Ga0181518_10014201 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014156 Open in IMG/M

Scaffold ID

Ga0181518_10014201 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5839
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

5839

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.6 to .7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.6 to .7

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F054329	Metagenome / Metatranscriptome	140	Y
F060241	Metagenome / Metatranscriptome	133	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181518_100142011	F060241	AGGA	MSAGVSPALSQVTASTRGVPRYKLTVPLALTVLRAGIPNQIPGRAFEIGEGGMGVVPASQLLVGESVRVEFLVPHMSAPVRATAVVRYQRERCFGLQF
Ga0181518_100142012	F054329	N/A	MVALIVAAVTHPLQAQQPSPGTSQPPENVPEVNYHLTVMTPQYRFLDTSGYGGRVGEYDSLQQSLGGDLSFDYVNVPEHMTIKSTWDVISRDDYNLKSRITFGKWLDFTLDNRSFLRHLDDNNYFGAAVISPDIIRIDAVPADSLLGIRRRINNASLKVKLPQVPVKLFVKGGWQARDGNSQMQYFDMGGDGVVPIDGTGCANCHSASQYRTLNYTTRNIAGGAEVKLGNLLKVVYQHEFRSFNDRMPNPLDFYGTSGTIPTSENIPYTPGERYVHSVLPRHQTQADLLQISMAVAHHLTLNGDLSYARTNNLYTPSDPRDLVTGNHSQNSFNADATLTWNPVSQLRAVADFHQQNLINEFVSSYSLADPTVFYAFGNPSLHRHWAGLKLAYRVSKQFDLETHYTRMNITRSNSTLWPQFSSPDNTDPLYVVPATFSNTAGAAVHYHSAELWNARVGYEWTGTHDPGYVTDPHTNNRLFGNVTITPVHWFTIGNDGSVIQQKSFPVVQRTNHLYVDSIFVTIKPVPEWSIGGGYTYLQDNLRTDMQFGNDLAVVVYTQPLVPYKQLSQTYSVHSTYELKKRLGLNVSFAHSAAHSGMRPDLNPADYPAFGPGTTTPALFAGALGIGAGPVSQVNVPQTLIGATGNYHLRAGFDGGLRFNYGSYTDNTIWNTPAYRPDVNGKLQSYSVFFGRVW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181518_10014201

Overview

Ecosystem & Geography

Associated Families

Sequences