NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181518_10042942

Scaffold Ga0181518_10042942


Overview

Basic Information
Taxon OID3300014156 Open in IMG/M
Scaffold IDGa0181518_10042942 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2783
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004122Metagenome / Metatranscriptome452Y
F010433Metagenome / Metatranscriptome304Y
F015781Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0181518_100429421F015781AGGMNSVVDTIVAASTSSEAQLPSRVFQIKPEESKLVCVGTDGREFALSRLVGSNVRIGDDVLVPASTGTATADTEVYIRKPSLRRADVYQVKAGYAALPKLDKREEPFVRVQVAE
Ga0181518_100429422F004122N/ALLPLLDLRPMDPVLYQRCLTAVWRSRKSAISRRDLQRAAGLAFQEETLDFDLLVAQLVREGILEPIVSSPFDFQIRRRNWTNPESAYAADDRLSLSTISREEQTARFRMLGLLDARILNPRLPQKRVQQIRKERDELERIYDATWMELENAIGSRAAEAIRKSVEEATEARAVQLDLPLEKKRTFDLEGEARCNQ*
Ga0181518_100429425F010433N/ALMLDSPLLTIQVLLPYTRCGGSIAVSNVHYTEMPGDDGGTPCPLFKIFSNVPVAVC*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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