NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134078_10041713

Scaffold Ga0134078_10041713


Overview

Basic Information
Taxon OID3300014157 Open in IMG/M
Scaffold IDGa0134078_10041713 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1554
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053950Metagenome140N
F077869Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0134078_100417131F053950N/AILYATAASQQRIDGFCLGADGALAATPTVQIATLGRLPRRVLVGNGVLYVAEADRIEAFAIGQRGGLRRLAGSEPVESLNPQDLTLNPDGKTLYVTHLGFLEAFALDAEGGLPKQFTSCVQGENTNDFLDAQATSGLLYVSADDIPGRIAIYRLNADGSLPQIGCGGLKKKDRPAVMRADSARKRLQRPKAFIVVRDFVYVEERSIHRLTAFRLQPDGTFCDKRKDANGNLVAESCGDLAYFLPTPACARRQAKKQRQQCAASETGPVLQYEDLVLYPGGETLLGTQYFKGRVDAYRLKPEPRLAGAPRVRLPKQPTRTCAANPVMTPVRLTATDKAVYVAGGELDRVVAFRLRSDGVPTDATPFSRTDEQTDSFPNDVAVAMLSAPCE*
Ga0134078_100417132F077869N/AMARRPPAVLNRLPILLGRHGMSWGELERRTLLPPRLLARLRAPGANPRLAVAERIAAALGVPVEAVWVR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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