NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181521_10010140

Scaffold Ga0181521_10010140


Overview

Basic Information
Taxon OID3300014158 Open in IMG/M
Scaffold IDGa0181521_10010140 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9289
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011724Metagenome287Y
F016487Metagenome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0181521_1001014010F011724GGAGGMSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARIHSALYARGIDPDAMALTPDQANFLRALNRDGSIADLADALQGNVSLQAGEDAHAAERRKSFERQVAEIKQGLYDKFFSQLARTVEIEPTLGGTAGGETDRSTARDRGENKAFSKDQAF*
Ga0181521_100101402F016487GGALAQAQKQPYYFVEIPDFAIAIASFSSTANVVTTLGGYGVTLYGVGGYGT*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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