NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181538_10612533

Scaffold Ga0181538_10612533


Overview

Basic Information
Taxon OID3300014162 Open in IMG/M
Scaffold IDGa0181538_10612533 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)567
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049150Metagenome147Y
F058365Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0181538_106125331F049150AGGAGMTPFYHARKSDGRWFVRVFALLIIAFPAVAQQAKVSAPLSADEVMGRVVGMNEVRAKALESYSSVRRYHLECHCVSHKKADMVVRTDYQAPNKKEFM
Ga0181538_106125332F058365N/AEPSRRFFETQRFFDALGNSGMPHSEIRVGPVLASTIYHFDPSVTRPGSGKEEVALSQLRGAPPRFYKDAQETTSTNTSRFGLSDITRRLTQ*

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