NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181532_10006113

Scaffold Ga0181532_10006113


Overview

Basic Information
Taxon OID3300014164 Open in IMG/M
Scaffold IDGa0181532_10006113 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10078
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007046Metagenome / Metatranscriptome359Y
F008261Metagenome / Metatranscriptome336Y
F021498Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0181532_100061133F008261GGAGMKIWHLAYAALGIAVARWVFKRQPMRVTDPITRFRTSGLL*
Ga0181532_100061138F021498GGAGGMSSKGKVVSVRVKDLSDFQLTPGLADALTASLDVSYRQYFAAACSGMSTKEAERQIAAMPEGMRYLTRVLDSLDSAFADFDTETAKLDLPHMQNHKPEAIKRYLEFRLQQFKMLLDAVEDYVGEKYPATGGHS*
Ga0181532_100061139F007046N/AVVITVEGGAGSRTCEGETIVVNLHGALIATAIGLSSGMRISIHVYLTDKRAAARVVYIDPKNPLRCGIELDEPRNIWGVSVPPDNWDETSVLETEH*
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