NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181532_10006222

Scaffold Ga0181532_10006222


Overview

Basic Information
Taxon OID3300014164 Open in IMG/M
Scaffold IDGa0181532_10006222 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9971
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006325Metagenome / Metatranscriptome376Y
F007808Metagenome / Metatranscriptome344Y
F011530Metagenome / Metatranscriptome290Y
F031223Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0181532_1000622210F031223AGGAGGMEHPLESLTKKEPKTDAELIAFSAVTRISHHLPISTVLSLPPSQLTPEQVYDSLLREAHALWDWYQGDVERRPPSGLSERTDRETWRPKTDSSFS*
Ga0181532_1000622215F007808GAGGMFYSIWLLAAALAGWAGGKIAGDDGFGTLADILLGITGAFVVRWFLENIGISLKDVYLLLFSIWGAAALPTAVRLGIRRHNRSKTRSRLEND*
Ga0181532_100062226F011530GGAGGMKDIAELMQRLFEIQSSGRQRSPELIAEDERLMDALQKRNLAGKPTQTVRLSQDSPEWTRFKA*
Ga0181532_100062228F006325GAGGMTNPMTDLDAYTDEELQQALARVLAQARGEVLNDAAVQKFWQLYQEIQRRELSVTGA*
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Institute for Fundamental Biomedical Research
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