Scaffold Ga0181532

Basic Information
Taxon OID	3300014164 Open in IMG/M
Scaffold ID	Ga0181532_10011131 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014164 Open in IMG/M

Scaffold ID

Ga0181532_10011131 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7004
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7004

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.3 to .4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.3 to .4

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F010114	Metagenome / Metatranscriptome	308	Y
F017965	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_100111312	F004823	AGGAG	MYATKAVNGVPAIQRDGQSVLSVCDQDWDFANWLCALLNELGHKSELLLNEQDWEWLKAIDSPFRRTAQHA*
Ga0181532_100111314	F017965	AGGA	MSEKIGHSDALYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAEYLLHRSSPRPERTATGIES*
Ga0181532_100111315	F006399	GGA	MATPSLNSRVQSLVTEYGVFWQFWPQFEQTHGERRLVGFEVELIGSHTSDLNHVDPACPTCRRVRSVLLAIADLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNLANGQSFETDLLNEVKTFLNRWGIHQR*
Ga0181532_100111316	F006278	N/A	MGIGRAGQNVSRIKPMFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTELSYIDSVGEQLLKWLASVGAVFVAGNVYAIAVCDQLGISPMQRISERRKRRHGNNEERSSIRHSHPVEAI*
Ga0181532_100111317	F001596	AGGAG	MSWFHSSTAAVDARNYASPAEIVACFQDQRNVLGRLAFLITGDQVTAEQAVVQACEMTLQGNSPFRDWLFEWAKAAAIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAQERAANLDLILGTDIQELLTELDPLCRAILVLRVGIRSSIRDCALRLNVSRAAVLGANCHVMTWLHNGHLKPMEENHDAPHAV*
Ga0181532_100111319	F010114	GAGG	MIIELNDDDTRLLHTVLLEQAQEHLSYANTSEVVERLYKLATRFERPVIELPT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181532_10011131

Overview

Ecosystem & Geography

Associated Families

Sequences