NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181528_10003317

Scaffold Ga0181528_10003317


Overview

Basic Information
Taxon OID3300014167 Open in IMG/M
Scaffold IDGa0181528_10003317 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9882
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F043015Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0181528_1000331711F003851GAGGMKQRKLAAASSRTNDENAKRVLRALEEARRGRVSTNDPIVEQLRQCPEAFKVGEILGKAFDSLKYAQDGGELGDRYLPPAGTVLPPLV*
Ga0181528_1000331712F043015N/AVIGLPLEVTFPWLKGIRGRYCTRWDEGPAAVLGMSLLRLGICRPNDWSGSAVDFAERGFRRFCSQNRAADAKSVWVGDLRITDSLFELTEQERNQVEAGRDGITDHLYLVGDYEAAASIPIGATLTRLEGEHAHLPAAFYEVFTTNLYKWMRVY
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