NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181534_10166524

Scaffold Ga0181534_10166524


Overview

Basic Information
Taxon OID3300014168 Open in IMG/M
Scaffold IDGa0181534_10166524 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050107Metagenome145N
F066389Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0181534_101665241F050107GAGGMAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRTPFRPLEIQHLVSILEALAPTNSLTKDMKELHESMKHRFINLNLKNRPRLLPTGEWMVTLAWYKADIEEVLTLLLEAKS
Ga0181534_101665243F066389N/ALNLSVGTEITATDVPYGSSYTNGHLYGAQAMGNILSGDLQNPDSAPLAEAFDPRTGTTYHGFRFPGNVVQDSRIPVGTIAMLNSNCHMVLMAPDGRTVECDVRDVMLSVDPARAMSERIALKAGEFGSGTIRGTMQMSPESHKGLMRAFGFTDEPKPVIVPQEDLFEDRTW*
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