Scaffold Ga0181531

Basic Information
Taxon OID	3300014169 Open in IMG/M
Scaffold ID	Ga0181531_10000005 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014169 Open in IMG/M

Scaffold ID

Ga0181531_10000005 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	232845
Total Scaffold Genes	227 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	147 (64.76%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

232845

Total Scaffold Genes

227 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

147 (64.76%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.1 to .2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.1 to .2

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001278	Metagenome / Metatranscriptome	733	Y
F011861	Metagenome / Metatranscriptome	286	Y
F013955	Metagenome / Metatranscriptome	267	Y
F022935	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_10000005102	F001278	N/A	MTKLLITEVTRMGPAFCVIGLQRENQKIHSVRPVSPNTNGWMDFPHQRGDILQCELTPFPGAKPHIEDRVSTRGFQKDSTVSELETVTYLRKAEIAHSMRELFGCPVHANKSGSGLYAIPGEATRSICGTETRNLRLEFYANELRATLVLSSGEVLRDLPLVDRDWRDFIDAALSESRGANRLGRLERFLNSQFHYKILSCPHHFIRLGLTRPYREVCWLMLDTLFPLPKLEWLEEF*
Ga0181531_10000005155	F022935	GGAGG	MSRCILAVALSFFLSGALPTQTTQTAPASVVLQTNAAKVNAVDAAAGSTVFDGDRLETQSKGMLSLRSGEIQFTLPEESTLWMNHEGLNATPRLQRGTVVFRAENGVGVEIIADDVRVRPHFPVLTVGQVTLEECYVIVTARTQSLDVTAGKETKNLEEGKSVRVARAGVCGAAINQPVAAVGQSRFFILPVAAAVAIGILVLHKGLESPDRP*
Ga0181531_10000005188	F013955	GGTGG	MDARISRAACLALGGLFLLVPFSAFAQKKTKKPKPPDPKIENYFGGVFLIGDGGIPNGPCFRIKGRVTSGDFFDALKSYDYGSDDGTIFRVGTYDVTEFPDKLLLSLTIRDQLCSYGLQQVGTGGYLTPQEMSSLKLSLYWKHGVDLRPVGKIAVVNRSVDPIQPFAKDLAAELPKRYSWSYELGIASAGVPLTDSLVLIFRTADGRIAARVAARL*
Ga0181531_1000000561	F011861	AGGAG	MARFEYSIITKASPSLAWLVFSDSHRWNTFANVYGDIRWREGRPWEPGSHMQIEILRPVNALIDHVITTCVPGKKVGWIDHAIGVAMAQWVTFEEQAGVGTRVHTWGEVIHAGIKIGGLTVEELLGSFTRTWYENFRMACNQLVIPGGAAPDDASVSVE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181531_10000005

Overview

Ecosystem & Geography

Associated Families

Sequences