NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181531_10003199

Scaffold Ga0181531_10003199


Overview

Basic Information
Taxon OID3300014169 Open in IMG/M
Scaffold IDGa0181531_10003199 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10089
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002209Metagenome / Metatranscriptome583Y
F004375Metagenome / Metatranscriptome441Y

Sequences

Protein IDFamilyRBSSequence
Ga0181531_100031994F004375GAGGMKVPKNVTTDRVWLRDDYSDKIDRIDEERKLTRFLETSANGSAIGQFLKQDRKEVQGPEAEYRFFYDPSSQKADYLALWAGMEKYPTVIRHTVENVSPDEAKAIDALTACALRLSPAQFGWAVAELEIQRQQAAE*
Ga0181531_100031996F002209AGGMNKVTPRDFRNAFLAVMQAERDEFRTAVGFETKSYNYFMRSQIYPRIGRQLGLLAWKQEYYTLDGMLYEERGLDDTGKYATYANWVSVAIEHENEASKAHETMNKLQLFNAPLKVLITYAVDGAATESLLRKYEGIIRASDVFNDVATLRQQLVVLGTPKTALPWRFYAYENEGFVLMLPA*
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