NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181531_10028221

Scaffold Ga0181531_10028221


Overview

Basic Information
Taxon OID3300014169 Open in IMG/M
Scaffold IDGa0181531_10028221 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3232
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio → Desulfovibrio sp. X2(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015363Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0181531_100282213F015363GGAVAACWPLAPNAFGQIQSTTSCPSGHRYWDVLSVMMMDPGLAANYHMEGITDGLPSAYVYTIWDQNQSKIYYVKNPQGNPWDINLYDSNYIYQWVTELGVWNGVNHWNDPKSCKKFNNGGQNSASDLSMRWAARCAVPGGENSSFWNPPPTTQPNNTNYYTYVDQELQSPDQNLDYSRLELLDTKTITITDHRANPPRPFSVTSLPLQYTYSCSVLQNINSCKFREIFEYGVDEDVNPVDRVKHSYGWIRWRYYTNSTEGDPHVAAKWKLSNSSTSDQLMPGQVSINFQCF*
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