Basic Information | |
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Taxon OID | 3300014169 Open in IMG/M |
Scaffold ID | Ga0181531_10274326 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1030 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .1 to .2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008565 | Metagenome / Metatranscriptome | 331 | Y |
F055058 | Metagenome / Metatranscriptome | 139 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181531_102743261 | F008565 | N/A | ITASLLLLCISFPASLEASHKVPRYLNKESSIDMSHMNRVFLGWVDLEPDAWALYGYSSRADWSDTIAALNAGFARSVQATYLPGRTITAAKDSENEITAPSDLYIKFSDVQVDYENDHLVLSIHFIDLKTNSEIASIPVRPYYGNASGIKNYLKAALDEVAKKLQVEVTGETQGKK* |
Ga0181531_102743262 | F055058 | AGGAG | MKRLAITAILLLLCISLPVSLTAAKVEVEGKAWLDAQKDPAAINVNGAWNSDEWGVLHLLQAEGSREVSGNGGGDQITGVVSGQRLFMLFANNHTVEYCAVLSPNGDNSLMGTYSD* |
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