NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181535_10053124

Scaffold Ga0181535_10053124


Overview

Basic Information
Taxon OID3300014199 Open in IMG/M
Scaffold IDGa0181535_10053124 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2779
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029879Metagenome / Metatranscriptome187Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0181535_100531242F057229GGAGGMRNKWKRYLDRTLQEGEMFGLVFTTLMLIVVEGCFVYWLHRIQLPDRHFAASGFLVVPPWYREPRFEVTLLLTIAAGMLFQVCRGLWDVWRERNRTASTEILKSLRRRVSAAASVAALAGLNLALAAWLR*
Ga0181535_100531243F029879N/AMDAAMLTESELREGIRKRRPIFPDVTVDQPVTLQAVDAQFRTARQNRADIGITNHVLNLFLESRNPFEPKRVRKPKMKAVVFGTLLALVVIAALAFNLAAPRPY*
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