NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172378_10284187

Scaffold Ga0172378_10284187


Overview

Basic Information
Taxon OID3300014203 Open in IMG/M
Scaffold IDGa0172378_10284187 Open in IMG/M
Source Dataset NameGroundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1280
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053314Metagenome / Metatranscriptome141N
F067884Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0172378_102841871F067884N/AMRDVQGAVNRYTVTAVSGDALGGWLEWFSALARQAQKFVLYDEDQVTMLKVVVETVVVSDSATEYDWGTVDRKPESRVGLAHVDFSETDWVH*
Ga0172378_102841872F053314GGAMRTTESTVVVKDNVVVTVWEAGKPVKTYHAHNTWGIAGLNALRNWFAGLGGTPITHIAWVDTAGVERARDIVTQRSVTVDKTVLIRQYLPSATPSNGYTLNRIRAYNAQTNGTQFAEAAFDAVGVAKTANNQITVEWAHSFADGGS*
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