 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014204 Open in IMG/M |
| Scaffold ID | Ga0172381_10012589 Open in IMG/M |
| Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7987 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022145 | Metagenome | 215 | Y |
| F034486 | Metagenome / Metatranscriptome | 174 | Y |
| F044910 | Metagenome | 153 | Y |
| F085177 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172381_100125893 | F034486 | N/A | MEETNQNLKQKKIALAQSENASVIVELMKDCMSTNPIIAKTEWETIVNAITLEVQGTMLKAMVDLIENIRQGSLYNQQ* |
| Ga0172381_100125894 | F022145 | N/A | MTPKEIKRKNYTVQVGYSKKAIKDKLLKFISKSGDEFEIGAEELASMLIGGVNSDTLEATFVESDKINVVEVGRQIACVLDKDMKKGEKININYAHPYPLEFALIEQVYGIAKVNMDAPALVLTKDYIKKVRAKIKPEQEKFLQKFYSSFKNLKLNKKV* |
| Ga0172381_100125898 | F085177 | N/A | MFGTINDYAVIVNNVLKHIAPKVSPTVKPEYLDFMCKVDNSERIYTDVGVTGLGMAEIITDGGIGASDAPIQGYSKNYVQMHFTKKVRLTFQTNFFLFESAAAKIKGSVKSKVIEGKNAIEHAKNYLAQSLLAQGFNTSFTWTPINAVGTPTPVATIGADAVEYWSQAHPREDGGAAWSNVIVDGATNSPQFTYSSLLAARRLHSEKKDGRGNPLISDLDTLVVRRGSTAAQFAKTIKGTIDKGLAPQQTNVFNNAPATDTFKIVELSPYQNLAMDGLMWGMFDSKMMTEDFGFLYIEALPTRAEPAVVDLLGNQDLVLNFNSLAVMGASDLRGWMWSDGDGNTV* |
| Ga0172381_100125899 | F044910 | N/A | MLQASHSKKIAEAVTAPVGTTTIVAAQPDAYIYIHELIGDLAAAGNLIIKCGTRTVASFTLDAGQGITEQDEPGMDGVSRFECRPGEAFILEVTGGTFNGAIDYSFGY* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |