NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172381_10040117

Scaffold Ga0172381_10040117


Overview

Basic Information
Taxon OID3300014204 Open in IMG/M
Scaffold IDGa0172381_10040117 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4087
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093163Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0172381_100401172F093163AGGAGMERKDVIDRAYQLINEPIDPNLKCGVEIVDIVNYKESEAGETVEYFASSAQDRAADDIYAADANGTLTYHKIGLKTVTALTFVGLQSKLETVLIDEILNSKDQSALAQKKEAIIRAMDSEEVRRILNLCLAVASQEVNKTTGMDLLDTIIAMKEKVSNYATDYVLLVASDVMNEIESYDKDNVSTFNYKMSIKEELAKIGIVKIVKVLGDSYYAGSTTPTLAAGKAILVGRNSGLAAGRPITFLRRKFSKEIAELSGAAEGAVRLIDVAKTPTVINGSSANTLGYGVFGYESIIQVLTNFRAIAWSDDLIS*
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