NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172377_10690269

Scaffold Ga0172377_10690269


Overview

Basic Information
Taxon OID3300014206 Open in IMG/M
Scaffold IDGa0172377_10690269 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)811
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053314Metagenome / Metatranscriptome141N
F067884Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0172377_106902691F067884N/ASVNMRDVQGAVNRYQVTAVSGDALGGWLEWFSALAQQAQKFVLYDEDQVTMLKLASDSVLVSDSATEYDHGTVDRMPESRVGLARADFSETDWVHV*
Ga0172377_106902692F053314GGAMRSTVMVADNVVVVVWEDGKPVKTCRVHNTWSTAGLNALRNWLTGLGGTPITHIAWVDSSGVERARDIVTQRLVPGDKTILFRQYLPSATSANGYALTRIRAYNAQTGGTRFADAEFDPVGVAKTANNQITVEWTHSFADGGT*
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